Publications


A global metagenomic map of urban microbiomes and antimicrobial resistance

Early transcontinental import of SARS-CoV-2 variant of concern 202112/01 (B.1.1.7) from Europe to Uruguay

Early transcontinental import of SARS-CoV-2 variant of concern 202112/01 (B.1.1.7) from Europe to Uruguay

Pagoo: an encapsulated and object-oriented framework for evolutionary analysis of bacterial pangenomes

Pangenome analysis reveals genetic isolation in Campylobacter hyointestinalis subspecies adapted to different mammalian hosts

Accurate and fast identification of Campylobacter fetus in bulls by real-time PCR targeting a 16S rRNA gene sequence

COVID-19 drug practices risk antimicrobial resistance evolution

Polyclonal Campylobacter fetus infections among unrelated patients, Montevideo, Uruguay, 2013-2018

Polyclonal Campylobacter fetus infections among unrelated patients, Montevideo, Uruguay, 2013-2018

simurg: simulate bacterial pangenomes in R

simurg: simulate bacterial pangenomes in R

Occurrence and diversity of Campylobacter species in captive chelonians

Multiple introductions, regional spread and local differentiation during the first week of COVID-19 epidemic in Montevideo, Uruguay

Schwann cell reprogramming into repair cells increases miRNA-21 expression in exosomes promoting axonal growth

The Tritryps comparative repeatome: insights on repetitive element evolution in Trypanosomatid pathogens

The fecal, oral, and skin microbiota of children with Chagas disease treated with benznidazole

Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters

Urban metagenomics uncover antibiotic resistance reservoirs in coastal beach and sewage waters

Nanopore sequencing significantly improves genome assembly of the protozoan parasite Trypanosoma cruzi

Pathogenomics of emerging Campylobacter species

Pathogenomics of emerging Campylobacter species

Comparative genomics identifies potential virulence factors in Clostridium tertium and C. paraputrificum

Integrated genomic epidemiology and phenotypic profiling of Clostridium difficile across intra-hospital and community populations in Colombia

Draft genome sequences of 40 pathogenic Leptospira strains isolated from cattle in Uruguay

Whole genome sequencing of the monomorphic pathogen Mycobacterium bovis reveals local differentiation of cattle clinical isolates

Inter- and intracontinental migrations and local differentiation have shaped the contemporary epidemiological landscape of canine parvovirus in South America

Inter- and intracontinental migrations and local differentiation have shaped the contemporary epidemiological landscape of canine parvovirus in South America

Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence

Deciphering the unexplored Leptospira diversity from soils uncovers genomic evolution to virulence

Biodiversity of environmental Leptospira: improving identification and revisiting the diagnosis

Leptospira venezuelensis sp. nov., a new member of the intermediate group isolated from rodents, cattle and humans

Phylen: automatic phylogenetic reconstruction using the EggNOG database

MLSTar: automatic multilocus sequence typing of bacterial genomes in R

MLSTar: automatic multilocus sequence typing of bacterial genomes in R

Surveying what's flushed away

First release of the bacterial biobank of the urban environment (BBUE)

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

Distinct Campylobacter fetus lineages adapted as livestock pathogens and human pathobionts in the intestinal microbiota

Campylobacter ornithocola sp. nov., a novel member of the Campylobacter lari group isolated from wild bird faecal samples

Assessing the intra-species genetic variability in the clonal pathogen Campylobacter fetus: CRISPRs are highly polymorphic DNA markers

Genomic and clinical evidence uncovers the enterohepatic species Helicobacter valdiviensis as a potential human intestinal pathogen

A novel real-time PCR assay for quantitative detection of Campylobacter fetus based on ribosomal sequences

Transcriptome sequencing reveals wide expression reprogramming of basal and unknown genes in Leptospira biflexa biofilms

Campylobacter geochelonis sp. nov. isolated from the western Hermann's tortoise (Testudo hermanni hermanni)

Whole-Genome sequences of Mycobacterium bovis Strain MbURU-001, isolated from fresh bovine infected samples

Molecular phylogeography of canine distemper virus: geographic origin and global spreading

A rural worker infected with a bovine-prevalent genotype of Campylobacter fetus subsp. fetus supports zoonotic transmission and inconsistency of MLST and whole-genome typing

Phylodynamic analysis of avian infectious bronchitis virus in South America

Genetic characterization of South American infectious bursal disease virus reveals the existence of a distinct worldwide-spread genetic lineage

Phylogenetic and genome-wide deep-sequencing analyses of canine parvovirus reveal co-infection with field variants and emergence of a recent recombinant strain

Genomic Evidence for the Emergence and Evolution of Pathogenicity and Niche Preferences in the Genus Campylobacter

Whole-genome sequencing of an isoniazid-resistant clinical isolate of Mycobacterium tuberculosis strain MtURU-002 from Uruguay

High local genetic diversity of canine parvovirus from Ecuador

Complete Genome Sequence of Campylobacter fetus subsp. venerealis Biovar Intermedius, Isolated from the Prepuce of a Bull

Differential expression of glycerol-3-phosphate dehydrogenase isoforms in flight muscles of the Chagas disease vector Triatoma infestans (Hemiptera, Reduviidae)

Phylodynamics analysis of canine parvovirus in Uruguay: evidence of two successive invasions by different variants

Reduced set of virulence genes allows high accuracy prediction of bacterial pathogenicity in humans

Application of a multiplex PCR assay for Campylobacter fetus detection and subspecies differentiation in uncultured samples of aborted bovine fetuses